2014
Liu C†, Song CQ†, Yuan ZF, Fu Y, Chi H, Wang LH, Fan SB, Zhang K, Zeng WF, He SM, Dong MQ*, Sun RX*. (2014) pQuant Improves Quantitation by Keeping out Interfering Signals and Evaluating the Accuracy of Calculated Ratios. Anal Chem. 86(11): 5286-94
Coffman K, Yang B, Lu J, Tetlow AL, Pelliccio E, Lu S, Guo DC, Tang C, Dong MQ*, Tamanoi F* (2014) Characterization of the Raptor/4E-BP1 interaction by chemical cross-linking coupled with mass spectrometry analysis. J Biol Chem. 289(8): 4723-34
Shen EZ, Song CQ, Lin Y, Zhang WH, Su PF, Liu WY, Zhang P, Xu J, Lin N, Zhan C, Wang X, Shyr Y, Cheng H*, Dong MQ* (2014) Mitoflash frequency in early adulthood predicts lifespan in Caenorhabditis elegans. Nature [published online Feb 12. 2014]
2013
Li TM, Chen J, Li X, Ding XJ, Wu Y, Zhao LF, Chen S, Lei X*, Dong MQ* (2013) Absolute Quantification of a Steroid Hormone that Regulates Development in Caenorhabditis elegans. Anal Chem. 85(19):9281-7
Sun LL, Li M, Suo F, Liu XM, Shen EZ, Yang B, Dong MQ, He WZ, Du LL (2013) Global analysis of fission yeast mating genes reveals new autophagy factors. PLoS Genet. 9(8):e1003715
Tao L, Xie Q, Ding YH, Li ST, Peng S, Zhang YP, Tan D, Yuan Z*, Dong MQ* (2013) CAMKII and Calcineurin Regulate the Lifespan of Caenorhabditis elegans through the FOXO Transcription Factor DAF-16. eLife 2:e00518
Ding YH, Du YG, Luo S, Li YX, Li TM, Yoshina S, Wang X, Klage K, Mitani S, Ye K*, Dong MQ* (2013) Characterization of PUD-1 and PUD-2, Two Proteins Up-Regulated in a Long-Lived daf-2 Mutant. PLoS One 8(6):e67158
Li MM, Nilsen A, Shi Y, Fusser M, Ding YH, Fu Y, Liu B, Niu Y, Wu YS, Huang CM, Olofsson M, Jin KX, Lv Y, Xu XZ, He C, Dong MQ, Rendtlew Danielsen JM, Klungland A, Yang YG. (2013) ALKBH4-dependent demethylation of actin regulates actomyosin dynamics. Nat Commun. 4:1832
Zhai Q, Yan L, Tan D, Chen R, Sun J, Gao L, Dong MQ, Wang Y, Li C. (2013) Phosphorylation-coupled proteolysis of the transcription factor MYC2 is important for jasmonate-signaled plant immunity. PLoS Genet. 9(4):e1003422
Chi H, Chen H, He K, Wu L, Yang B, Sun RX, Liu J, Zeng WF, Song CQ, He SM*, Dong MQ* (2013) pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass Spectra. J Proteome Res. 12(2):615-25
2012
Yang B, Wu YJ, Zhu M, Fan SB, Lin J, Zhang K, Li S, Chi H, Li YX, Chen HF, Luo SK, Ding YH, Wang LH, Hao Z, Xiu LY, Chen S, Ye K, He SM*, and Dong MQ* (2012) Identification of Cross-linked Peptides from Complex Samples. Nature Methods 9(9):904-6
Qu M, Yang B, Tao L, Yates JR 3rd, Russell P, Dong MQ, Du LL (2012) Phosphorylation-dependent interactions between Crb2 and Chk1 are essential for DNA damage checkpoint. PLoS Genet. 8(7):e1002817
Xie Q, Hao Y, Tao L, Peng S, Rao C, Chen H, You H, and Dong MQ, Yuan Z (2012) Lysine Methylation of FOXO3 Regulates Oxidative Stress-induced Neuronal Cell Death. EMBO Reports 13(4):371-7
Zhao Y, Sun W, Zhang P, Chi H, Zhang M, Song CQ, Ma X, Shang Y, Wang B, Hu Y, Hao Z, Huhmer A, Meng F, L'Hernaultf S, He SM, Dong MQ*, Miao L* (2012) Nematode Sperm Maturation Triggered by Protease Involves Sperm-secreted Serine Protease Inhibitor (Serpin). Proc Natl Acad Sci U S A. 109(5):1542-7
2011
Li S, Duan J, Li D, Yang B, Dong M, Ye K. (2011) Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase. Genes Dev. 25(22):2409-21.
Li J, Wang J, Hou W, Jing Z, Tian C, Han Y, Liao J, Dong MQ, Xu X. (2011) Phosphorylation of Ataxin-10 by polo-like kinase 1 is required for cytokinesis. Cell Cycle. 10(17):2946-58
Zheng M, Wang YH, Wu XN, Wu SQ, Lu BJ, Dong MQ, Zhang H, Sun P, Lin SC, Guan KL, Han J. (2011) Inactivation of Rheb by PRAK-mediated phosphorylation is essential for energy-depletion-induced suppression of mTORC1. Nat Cell Biol. 13(3):263-72.
Sun RX*, Dong MQ*, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM (2010) Improved Peptide Identification for Proteomic Analysis Based on Comprehensive Characterization of Electron Transfer Dissociation Spectra. J Proteome Res. 9(12): 6354-67
2010 and before
Li YH, Dong MQ, Guo Z. (2010) Systematic analysis and prediction of longevity genes in Caenorhabditis elegans. Mech Ageing Dev. 131(11-12):700-9.
Wang SF, Kou ZH, Jing ZY, Zhang Y, Guo XZ, Dong M, Wilmut I, Gao SR (2010) Proteome of mouse oocytes at different developmental stages. Proc Natl Acad Sci U S A. 107(41): 17639-44.
Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM*, Dong MQ* (2010) pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra. J Proteome Res. 9(5): 2713-24
Sun RX*, Dong MQ,* Chi H, Yang B, Xiu LY, Wang LH, Fu Y, He SM (2010) ECD/ETD-based tandem mass spectrometry in proteomics. Progress in Biochemistry and Biophysics 37(1): 94-102. Review. (Chinese)
Zhang DW, Shao J, Lin J, Zhang N, Lu BJ, Lin SC, Dong MQ, Han J. (2009) RIP3, an Energy Metabolism Regulator that Switches TNF-Induced Cell Death from Apoptosis to Necrosis. Science 325(5938): 332-6
Liu C†, Song CQ†, Yuan ZF, Fu Y, Chi H, Wang LH, Fan SB, Zhang K, Zeng WF, He SM, Dong MQ*, Sun RX*. (2014) pQuant Improves Quantitation by Keeping out Interfering Signals and Evaluating the Accuracy of Calculated Ratios. Anal Chem. 86(11): 5286-94
Coffman K, Yang B, Lu J, Tetlow AL, Pelliccio E, Lu S, Guo DC, Tang C, Dong MQ*, Tamanoi F* (2014) Characterization of the Raptor/4E-BP1 interaction by chemical cross-linking coupled with mass spectrometry analysis. J Biol Chem. 289(8): 4723-34
Shen EZ, Song CQ, Lin Y, Zhang WH, Su PF, Liu WY, Zhang P, Xu J, Lin N, Zhan C, Wang X, Shyr Y, Cheng H*, Dong MQ* (2014) Mitoflash frequency in early adulthood predicts lifespan in Caenorhabditis elegans. Nature [published online Feb 12. 2014]
2013
Li TM, Chen J, Li X, Ding XJ, Wu Y, Zhao LF, Chen S, Lei X*, Dong MQ* (2013) Absolute Quantification of a Steroid Hormone that Regulates Development in Caenorhabditis elegans. Anal Chem. 85(19):9281-7
Sun LL, Li M, Suo F, Liu XM, Shen EZ, Yang B, Dong MQ, He WZ, Du LL (2013) Global analysis of fission yeast mating genes reveals new autophagy factors. PLoS Genet. 9(8):e1003715
Tao L, Xie Q, Ding YH, Li ST, Peng S, Zhang YP, Tan D, Yuan Z*, Dong MQ* (2013) CAMKII and Calcineurin Regulate the Lifespan of Caenorhabditis elegans through the FOXO Transcription Factor DAF-16. eLife 2:e00518
Ding YH, Du YG, Luo S, Li YX, Li TM, Yoshina S, Wang X, Klage K, Mitani S, Ye K*, Dong MQ* (2013) Characterization of PUD-1 and PUD-2, Two Proteins Up-Regulated in a Long-Lived daf-2 Mutant. PLoS One 8(6):e67158
Li MM, Nilsen A, Shi Y, Fusser M, Ding YH, Fu Y, Liu B, Niu Y, Wu YS, Huang CM, Olofsson M, Jin KX, Lv Y, Xu XZ, He C, Dong MQ, Rendtlew Danielsen JM, Klungland A, Yang YG. (2013) ALKBH4-dependent demethylation of actin regulates actomyosin dynamics. Nat Commun. 4:1832
Zhai Q, Yan L, Tan D, Chen R, Sun J, Gao L, Dong MQ, Wang Y, Li C. (2013) Phosphorylation-coupled proteolysis of the transcription factor MYC2 is important for jasmonate-signaled plant immunity. PLoS Genet. 9(4):e1003422
Chi H, Chen H, He K, Wu L, Yang B, Sun RX, Liu J, Zeng WF, Song CQ, He SM*, Dong MQ* (2013) pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass Spectra. J Proteome Res. 12(2):615-25
2012
Yang B, Wu YJ, Zhu M, Fan SB, Lin J, Zhang K, Li S, Chi H, Li YX, Chen HF, Luo SK, Ding YH, Wang LH, Hao Z, Xiu LY, Chen S, Ye K, He SM*, and Dong MQ* (2012) Identification of Cross-linked Peptides from Complex Samples. Nature Methods 9(9):904-6
Qu M, Yang B, Tao L, Yates JR 3rd, Russell P, Dong MQ, Du LL (2012) Phosphorylation-dependent interactions between Crb2 and Chk1 are essential for DNA damage checkpoint. PLoS Genet. 8(7):e1002817
Xie Q, Hao Y, Tao L, Peng S, Rao C, Chen H, You H, and Dong MQ, Yuan Z (2012) Lysine Methylation of FOXO3 Regulates Oxidative Stress-induced Neuronal Cell Death. EMBO Reports 13(4):371-7
Zhao Y, Sun W, Zhang P, Chi H, Zhang M, Song CQ, Ma X, Shang Y, Wang B, Hu Y, Hao Z, Huhmer A, Meng F, L'Hernaultf S, He SM, Dong MQ*, Miao L* (2012) Nematode Sperm Maturation Triggered by Protease Involves Sperm-secreted Serine Protease Inhibitor (Serpin). Proc Natl Acad Sci U S A. 109(5):1542-7
2011
Li S, Duan J, Li D, Yang B, Dong M, Ye K. (2011) Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase. Genes Dev. 25(22):2409-21.
Li J, Wang J, Hou W, Jing Z, Tian C, Han Y, Liao J, Dong MQ, Xu X. (2011) Phosphorylation of Ataxin-10 by polo-like kinase 1 is required for cytokinesis. Cell Cycle. 10(17):2946-58
Zheng M, Wang YH, Wu XN, Wu SQ, Lu BJ, Dong MQ, Zhang H, Sun P, Lin SC, Guan KL, Han J. (2011) Inactivation of Rheb by PRAK-mediated phosphorylation is essential for energy-depletion-induced suppression of mTORC1. Nat Cell Biol. 13(3):263-72.
Sun RX*, Dong MQ*, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM (2010) Improved Peptide Identification for Proteomic Analysis Based on Comprehensive Characterization of Electron Transfer Dissociation Spectra. J Proteome Res. 9(12): 6354-67
2010 and before
Li YH, Dong MQ, Guo Z. (2010) Systematic analysis and prediction of longevity genes in Caenorhabditis elegans. Mech Ageing Dev. 131(11-12):700-9.
Wang SF, Kou ZH, Jing ZY, Zhang Y, Guo XZ, Dong M, Wilmut I, Gao SR (2010) Proteome of mouse oocytes at different developmental stages. Proc Natl Acad Sci U S A. 107(41): 17639-44.
Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM*, Dong MQ* (2010) pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra. J Proteome Res. 9(5): 2713-24
Sun RX*, Dong MQ,* Chi H, Yang B, Xiu LY, Wang LH, Fu Y, He SM (2010) ECD/ETD-based tandem mass spectrometry in proteomics. Progress in Biochemistry and Biophysics 37(1): 94-102. Review. (Chinese)
Zhang DW, Shao J, Lin J, Zhang N, Lu BJ, Lin SC, Dong MQ, Han J. (2009) RIP3, an Energy Metabolism Regulator that Switches TNF-Induced Cell Death from Apoptosis to Necrosis. Science 325(5938): 332-6